PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 130aa    MW: 14774.6 Da    PI: 6.2628
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.22.7e-5419114297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP+nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ep++ yl++yrele +
  XP_004488253.1  19 KEQDRLLPIANVGRIMKHILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVD 113
                     89******************************************************************************************988 PP

           NF-YB  97 k 97 
                     k
  XP_004488253.1 114 K 114
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5013120IPR009072Histone-fold
SuperFamilySSF471139.03E-3821117IPR009072Histone-fold
PfamPF008086.0E-272488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.7E-195270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.7E-197189No hitNo description
PRINTSPR006157.7E-1990108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVDNIGGSSS NDNGDFVIKE QDRLLPIANV GRIMKHILPQ NAKISKESKE TMQECVSEFI  60
SFVTSEASEK CRKERRKTVN GDDICWALAT LGFDDYAEPM RRYLHRYREL EVDKINSNNQ  120
EIRGGNGPHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-4518109192Transcription factor HapC (Eurofung)
4g91_B2e-4518109192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182911e-123JQ918291.1 Medicago truncatula nuclear transcription factor Y subunit B18 (NF-YB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488253.11e-94PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A072TR102e-84A0A072TR10_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX65e-84I3TAX6_MEDTR; Nuclear transcription factor Y subunit B18
STRINGGLYMA07G37840.26e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-58nuclear factor Y, subunit B5